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Category Archives: Chemistry

PubChem, CouchDB and data pipelines

By Deepak Singh | Published: January 29, 2010
Rich Apodaca has a great set of blog posts on using PubCouch, the CouchDB interface for PubChem. The series is great in itself, but I was especially intrigued by the title of the third installment, PubCouch: Streams Aren’t Just for Pipeline Pilot. In the post Rich describes how PubCouch makes it possible to [...]
Also posted in Bytes, Informatics, Molecules, Programming | 1 Comment

Web as platform: ChemVendor and the chemical web

By Deepak Singh | Published: March 1, 2009
Image via Wikipedia I have talked before about Assay Depot, which is a web-based assay provisioning portal written in Ruby on Rails (or does it include some bits of Merb now?). From MetaMolecular comes ChemVendor, a chemical product management system also written in Ruby on Rails. ChemVendor is a system that puts chemical entities at it’s [...]
Also posted in Informatics, Software & Internet | Leave a comment

More on chemistry and the data web

By Deepak Singh | Published: February 23, 2009
Image via Wikipedia I should blog about chemistry more often. Recent thoughts on Chemistry on the Web and observations from my day job in the disparity of usage and awareness between biology and chemistry led to a post on Friendfeed. That’s becoming a fairly active discussion and led to a couple of posts by [...]
Also posted in Informatics, Open Science | Leave a comment

Chemistry on the data web

By Deepak Singh | Published: February 21, 2009
While most might equate my interests, and this blog, with biology, the fact remains that I am a trained chemist. Which is why it gives me great pleasure to see chemistry opening up a little bit. Some of my favorite bloggers are chemists, and with people like Rich, Rajarshi and Egon active online, [...]
Also posted in Informatics, Open Science | 2 Comments

When molecules go viral

By Deepak Singh | Published: February 4, 2009
Image by Shevralay via Flickr What happens when a compound goes viral? I am sure you’ve thought about this many times. For the 2 of you not on FriendFeed, I point you to a post by Antony Williams on the Chemspider blog where he announces embeddable chemical structures. Picking up on an idea [...]
Also posted in Software & Internet | 5 Comments

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