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Things I noticed #13

A thoroughly enjoyable weekend spent at Mindcamp 3.0 brings another week to an end. The coming week is going to see the next step in the evolution of this blog. With luck, I am going to be moving the blog to a new host. After that I plan to begin the construction of my web empire in earnest. Just kidding, but I do have multiple interests and it would be good to build a good portal into that world. Hopefully the transfer will be smooth and any downtime barely noticeable. I will probably make the jump sometime over the next few days. With all that, what did I notice this week?

Pipelining, workflows and grids

My favorite data pipelining company has signed a deal with Altair Engineering. As a member of Scitegic’s ISV program Altair can now add something that Pipeline Pilot has been sorely missing, at least in a formal sense, a distributed computing capability

Tufts on biotech

The latest report from the Tufts Center for the Study of Drug Development focuses on biotech drugs. According to this study, the cost for a biotech drug is ~$1.2 billion. The Tufts impact reports are taken quite seriously by industry watchers, e.g. the figure often reported for the development of a new chemical entity is taken from a previous Tufts report. The part that jumped out at me was that it takes 8% longer to develop biotech derived drugs. I wonder what the primary bottlenecks are?

The HHS and Personalized Healthcare

The Healthcare IT Guy points to an RFI from HHS for personalized healthcare. He also announces the start of the HIMSS blog

Tracking memes in science

Postgenomic has taken the next step towards becoming the techmeme of the scientific world. The scientific blogosphere is still too fragmented and small for a memetracker to have the kind of impact that techmeme has, but the day will come when we will all be turning to postgenomic to get our daily fill of scientific news.

Googling diagnoses

Via postgenomic, I found this blog post that talks about a BMJ paper that suggests that using google had a 58% success rate when the diagnosis was not known. The study raises a more important question (and this came up at Mindcamp too). When, where and how can search help the medical community. Of course, that is a frequent topic in this space, so I will not go further, but it’s interesting food for thought.

It’s not just the biologists

Chemists are beginning to wonder about open publishing. Peter Murray-Rust is of course, one of the premier supporters of open data standards in the chemistry world, so to see this on his blog is not a susprise. The American Chemical Society, e.g., till very recently required a user to register to see abstracts (that has changed). It would be a good start for the ACS to start working with organizations like Nature on publishing standards.

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9 Comments

  1. Posted November 13, 2006 at 00:18 | Permalink

    It’s not just the biologists…
    Thanks for this. I would like to be optimistic but actually the reverse is true in chemistry so far. The main Open publishing activity, Beilstein Journal of Organic Chemistry has yet to take off. And the posting was catalysed by a single request on the CHMINF-L list which I suspect will get little support. But let us at least be optimistic!

  2. Posted November 13, 2006 at 03:18 | Permalink

    It’s not just the biologists…
    Thanks for this. I would like to be optimistic but actually the reverse is true in chemistry so far. The main Open publishing activity, Beilstein Journal of Organic Chemistry has yet to take off. And the posting was catalysed by a single request on the CHMINF-L list which I suspect will get little support. But let us at least be optimistic!

  3. Posted November 13, 2006 at 02:11 | Permalink

    Well don’t forget the possibility that I would launch a science vertical myself! If I ever did, hopefully that would be the “Techmeme” of science. :)

  4. Posted November 13, 2006 at 14:09 | Permalink

    Megite just released the Megite For Science. Still plenty of room to improve. Keep tuned.

  5. Posted November 13, 2006 at 17:09 | Permalink

    Megite just released the Megite For Science. Still plenty of room to improve. Keep tuned.

  6. Posted November 13, 2006 at 19:23 | Permalink

    Touché … yes it would. There is always room for more than one, but I am partial to the work that Stew has done.

    Peter, I agree with you. Although I blog about biology, I am a chemist by training. Biology has one advantage. Data and data management have become central to the subject thanks to all the genome efforts. Chemistry is still some way away from that. Hopefully time will change.

  7. Posted November 13, 2006 at 22:23 | Permalink

    Touché … yes it would. There is always room for more than one, but I am partial to the work that Stew has done.

    Peter, I agree with you. Although I blog about biology, I am a chemist by training. Biology has one advantage. Data and data management have become central to the subject thanks to all the genome efforts. Chemistry is still some way away from that. Hopefully time will change.

  8. Posted November 17, 2006 at 18:03 | Permalink

    Did you see that article by Pedro Cuatrecasas “Drug Discovery in Jeopardy” (J. Clin. Invest. (2006) 116: 2837-2842) http://www.jci.org/cgi/content/full/116/11/2837?
    Lots of reasons that drug discovery/development is taking longer and costing more. No solutions offered, however.

  9. Posted November 17, 2006 at 21:03 | Permalink

    Did you see that article by Pedro Cuatrecasas “Drug Discovery in Jeopardy” (J. Clin. Invest. (2006) 116: 2837-2842) http://www.jci.org/cgi/content/full/116/11/2837?
    Lots of reasons that drug discovery/development is taking longer and costing more. No solutions offered, however.

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